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Publications

CEND affiliates and fellows are research leaders - publishing new discoveries to accelerate progress against neglected and emerging diseases.

Publications

Malaria in Children at 9 US Hospitals: 2016–2023

Sesh Alexander Sundararaman, Brianne Roper, Amy KF Davis, Karen L Hanze Villavicencio, Jonathan A Mayhew, Michelle L Wang, Nina L Tang, Vijaya L Soma, Ziyi Wang, Margaret E Feeney, Indi Trehan, Jill E Weatherhead, Chandy C John, Jeffrey S Gerber, Audrey R Odom John

Congenital cytomegalovirus infection drives oligoclonal expansion of cytotoxic γδ T cells from early fetal progenitors

Justine Levan, Anna V Vaaben, Jessica Tsui, Brittany R Davidson, Meagan E Olive, Perri C Callaway, Catherine BT Nguyen, Mikias Ilala, Ravi K Patel, Riana D Hunter, Gabriela K Fragiadakis, Alexis J Combes, Felistas Nankya, Grant Dorsey, Abel Kakuru, Mary Muhindo, Margaret E Feeney

Target product profiles of laboratory and data analytical frameworks for genotyping to monitor antimalarial efficacy

Mateusz M Plucinski, Amy Wesolowski, Inna Gerlovina, Aimee R Taylor, Jessica Briggs, Andrés Aranda-Díaz, Monica Golumbeanu, Marko Bajic, Jeffrey A Bailey, Joel LN Barratt, Caroline Buckee, Awa B Deme, Ingrid Felger, Anita Ghansah, Ian Hastings, Johanna Helena Kattenberg, Alfredo Mayor, Didier Menard, Leah F Moriarty, Daniel Neafsey, Lucy Okell, Isabella Oyier, Jaishree Raman, Philip J Rosenthal, Anna Rosanas-Urgell, Robert Verity, Sarah K Volkman, Christian Nsanzabana, Bryan Greenhouse

Cross-clade vaccination to overcome sarbecovirus or merbecovirus neutralization gaps

Wan Ni Chia, Feng Zhu, Samuel Mo Sheng Cheng, Wee Chee Yap, Abeer N. Alshukairi, Yun Yan Mah, Mayfong Mayxay, Vilada Chansamouth, Andrew Letizia, Beng Lee Lim, Yidan Wang, Madeline Sheng Si Kwek, Tierra Smiley Evans, Ohnmar Aung, Hlaing Myat Thu, Christine K. Johnson, Yanqun Wang, Jincun Zhao, Jessica E. Manning, Christina Yek, Chanthap Lon, Seng Heng, Sovann Ly, Rithea Leang, Rekol Huy, Aghnianditya Kresno Dewantari, Frilasita Aisyah Yudhaputri, Khin Saw Aye Myint, Matthew P. Rubach, John A. Crump, Venance P. Maro, Nicole J. Moreland, Aimee Paterson, Richard Charlewood, Jingjing Song, Shiwei Chen, Wan Yi Tan, Chris Ka Pun Mok, Catherine Hong Huan Hor, David Lye, David SC. Hui, Barnaby E. Young, Malik Peiris, Lin-Fa Wang, and Chee Wah Tan.

Modified Anti-PstS1 Bi-specific antibodies unlock potent protection against tuberculosis

Akanksha, Rania Bouzeyen, Avia Watson, Gil Wiseglass, Nyaradzai Sithole, Lilach Abramovitz, Noam Ben-Shalom, Rotem Rubinstein, Babak Javid, Natalia T Freund

Prior contact lens wear reduces susceptibility of the superficially-injured cornea to bacterial adhesion

Yujia Yang, Orneika Flandrin, Sara J Abboud, Eric Jedel, David J Evans, Suzanne MJ Fleiszig

Dengue transmission risk in California under climate and land-use change: a semi-mechanistic modelling study

Lisa I Couper, Terrell J Sipin, Samantha Sambado, Zoe Rennie, Kyle M Shanebeck, Kelsey P Lyberger, Philip PA Collender, Van Ngo, Justin V Remais, Andrew J MacDonald

A bidirectional nanAKE locus enables sialic acid catabolism in gut microbiome member Hungatella hathewayi

Vienvilay Phandanouvong-Lozano, Letizia Pastore, Gabriel Miller, Kathryn Y Lin, Ashley R Wolf

Cas9+ conditionally immortalized neutrophil progenitors as a tool for genome-wide CRISPR screening for neutrophil differentiation and function

Robyn M Jong, Krystal L Ching, Nicholas E Garelis, Alex Zilinskas, Xammy Huu Wrynla, Sagar Rawal, Bianca C Hill, Bridget A Luckie, Lillian Shallow, Jeffery S Cox, Gregory M Barton, Sarah A Stanley

Extensive cryptic circulation sustains mpox among men who have sex with men

Joseph A. Lewnard, Miguel I. Paredes, Matan Yechezkel, Gregg S. Davis, Vennis Hong, Jessica Skela, Utsav Pandey, Noah T. Parker, Lauren C. Granskog, Magdalena E. Pomichowski, Iris Anne C. Reyes, Isabel Rodriguez-Barraquer, Nicola F. Müller, Sara Y. Tartof 
 

SmileyLlama: modifying large language models for directed chemical space exploration

Joseph M Cavanagh, Kunyang Sun, Andrew Gritsevskiy, Dorian Bagni, Yingze Wang, Thomas D Bannister, Teresa Head-Gordon

Localized heme sensing through a ternary molecular glue

Michael Heider, Clara Hipp, Zhi Yang, Han Xiao, Tobias Beschauner, Eddie Wehri, Wencke Walter, Rumi Sherriff, Srividya Chandrasekhar, Torsten Haferlach, Julia Schaletzky, Michael Rape

Low-dose Inorganic Arsenic Exposure Reprograms Macrophages Differentiation and Function Toward Tumor-promoting Phenotypes

Emily J Illingworth, Sylvia S Sanchez, Kristal A Rychlik, Andre Kleensang, Jason Laird, Gabriel A Lopez-Cecetaite, M Carolina Rodriguez Steube, Aakriti Mathur, Pritam Sadhukhan, Daniel A Medina-Cleghorn, Daniel Nomura, Martyn T Smith, Mohammad O Hoque, Fenna CM Sillé

Epidemiological impacts of nonpharmaceutical interventions are modulated by immunity exposure trade offs

Chadi M Saad-Roy, Bjarke Frost Nielsen, Margaret L Lind, Caroline E Wagner, Arne Traulsen, C Jessica E Metcalf, Mike Boots, Derek AT Cummings, Bryan T Grenfell

Nominating Genetically Driven Immune Disease Genes for BEACONS: The First US Multistate Genomic Newborn Screening Initiative

Xiao P Peng, Matthew J Kan, Jennifer M Puck, Joshua Milner, Britt Johnson, Rebecca Marsh, Roshini Abraham, Ivona Aksentijevich, Charles J Billington Jr, Manish J Butte, Scott Canna, Shanmuganathan Chandrakasan, Samuel Cern Cher Chiang, Ottavia M Delmonte, Raphaela Goldbach-Mansky, Eyal Grunebaum, Rebecca Hale, Maleewan Kitcharoensakkul, Craig Platt, Daniella Schwartz, Christine M Seroogy, Kathleen Sullivan, Teresa Tarrant, Hannie Zomer, Amber Begtrup, Steven E Brenner, Stephanie A Coury, Dalia Kasperaviciute, Thomas Minton, Harini Somanchi, Jay R Thiagarajah, Carrie Blout Zawatsky, Rebekah Zimmerman, Ingrid Holm, Melissa Wasserstein, Robert Green, Nina Gold

Advances in Protein Function Prediction from the Fifth CAFA Challenge

M Clara De Paolis Kaluza, Rashika Ramola, Parnal Joshi, Damiano Piovesan, Walter Reade, Sandra Orchard, Maria J Martin, Alex Ignatchenko, Kaggle Competition Participants, Burkhard Rost, Christine A Orengo, Marc Robinson-Rechavi, Dannie Durand, Steven E Brenner, Casey S Greene, Sean D Mooney, Iddo Friedberg, Predrag Radivojac

Economic costs of TB and HIV in high-TB-burden countries

Manuel Barron, Stefano Bertozzi, Paul Gertler