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Publications

CEND affiliates and fellows are research leaders - publishing new discoveries to accelerate progress against neglected and emerging diseases.

Publications

A malaria seasonality dataset for sub-Saharan Africa

Francesca Sanna, Suzanne H Keddie, Tara Boyhan, Paulina A Dzianach, Michael McPhail, Julia Seitz, Thomas Nguyen, Adrian Redpath, Twatasha Chikolwa, Annie J Browne, Jailos Lubinda, Adam Saddler, Sarah Hafsia, Rubi Jayaseelen, Hunter S Baggen, Jennifer A Rozier, Tasmin L Symons, Joseph Harris, Sarah Connor, Camilo Vargas, Charles Whittaker, Michele Nguyen, Peter W Gething, Daniel J Weiss

Circadian Biology in Parasites: Beyond Known Mechanisms

Mukhtar Sadykov, Filipa Rijo-Ferreira

Wastewater surveillance reveals patterns of antibiotic resistance across the United States [Pre-print]

Sooyeol Kim, Alessandro Zulli, Elana MG Chan, Dorothea Duong, Rebecca Y Linfield, Caroline McCormack, Bradley J White, Marlene K Wolfe, Alexandria B Boehm, Amy J Pickering

SurFlex microscopy: Measuring flexibility of surface-tethered biomolecules

Aymeric Chorlay, Siddhansh Agarwal, Lena Blackmon, Andres Dextre, Daniel A Fletcher

Efficacy and potential human and economic impact of a broadly protective betacoronavirus vaccine [Pre-print]

George W Carnell, Robert Vendramelli, Charles Whittaker, Jonathan A Holbrook, Srivatsan Parthasarathy, Hazel Stewart, Joey Olivier, Bryce Warner, Thang Truong, Charlotte George, Sneha B Sujit, Sruthika K Ashokan, Maria Suau Sans, Chloe Qingzhou Huang, David A Wells, Paul Tonks, Martina Pfranger, Sebastian Einhauser, Patrick Neckermann, Diego Cantoni, Andrew CY Chan, Laura O’Reilly, Luis Ohlendorf, Isaac Unwins, Stefan P Rautenbach, Matteo Ferrari, Andrew E Firth, Johannes Geiger, Christian Dohmen, Verena Mummert, Anne Rosalind Samuel, Christian Plank, Joanne Marie M Del Rosario, Nigel Temperton, Benedikt Asbach, Simon DW Frost, Rebecca Kinsley, Sneha Vishwanath, Sofiya Fedosyuk, Ralf Wagner, Darwyn Kobasa, Jonathan L Heeney

Infectious Disease: Evolution, Mechanism and Global Health

Rachel Hackett, Judith E Allen, Sumana Sanyal, David M Tobin, Russell Vance

MAIT cells induced by engineered Listeria exhibit antibacterial and antitumor activity [Pre-print]

Rafael Rivera-Lugo, Jesse Garcia Castillo, Mariya Lobanovska, Eugene Tang, Andrea Anaya-Sanchez, Scott Espich, Sarah A. Stanley,  View ORCID ProfileMichel DuPage, Daniel A. Portnoy

Translational regulation in stress biology

Naomi R Genuth, Andrew Dillin

Portable digital microscopy with point-of-care testing for low-cost and efficient prevalence surveys for schistosomiasis control

Isaac I Bogoch, Jean T Coulibaly, Kigbafori D Silue, Karla N Fisher, María Díaz de León Derby, Daniel A Fletcher, Nathan C Lo

Quantifying the impact of a broadly protective sarbecovirus vaccine in a future SARS-X pandemic

Charles Whittaker, Gregory Barnsley, Daniela Olivera Mesa, Victoria Cox, Daniel J Laydon, Chee Wah Tan, Feng Zhu, Rob Johnson, Patrick Doohan, Lilith K Whittles, Gemma Nedjati-Gilani, Peter Winskill, Alexandra B Hogan, Arminder Deol, Christinah Mukandavire, Katharina Hauck, David Chien Boon Lye, Lin-Fa Wang, Oliver J Watson, Azra C Ghani

Age-related remodeling of the sialoglycans dampens murine CD8+ T cell function

Hanlin Zhang, C Kimberly Tsui, Jesse Garcia Castillo, Esther Jeong Yoon Kim, Audrey Evangelista, Heng Chen Liu, Larry K Joe, Nicholas Twells, Ellen A Robey, Lara K Mahal, Michel DuPage, Andrew Dillin

Effects of commonly used antibiotics on children’s developing gut microbiomes and resistomes in peri-urban Lima, Peru

Neha Sehgal, Monica J Pajuelo, Robert H Gilman, Amy J Pickering, Ashlee M Earl, Colin J Worby, Maya L Nadimpalli

Cross-Organ Mitochondrial Communication in Stress and Disease

Koning Shen, Jenni Durieux, Andrew Dillin

T cell monocyte complexes exhibit distinct immune signatures during infection

Ningxin Kang, Ashu Chawla, Hannah Hillman, Rashmi Tippalagama, Cheryl Kim, Zbigniew Mikulski, Sara McArdle, Grégory Seumois, Pandurangan Vijayanand, Thomas J Scriba, Aruna D De Silva, Angel Balmaseda, Eva Harris, Daniela Weiskopf, Alessandro Sette, Cecilia Lindestam Arlehamn, Bjoern Peters, Julie G Burel

Tuberculosis susceptibility in genetically diverse mice reveals functional diversity of neutrophils

Mariëtta M Ravesloot-Chávez, Erik Van Dis, Douglas Fox, Andrea Anaya-Sanchez, Scott Espich, Xammy Huu Nguyenla, Sagar Rawal, Helia Samani, Mallory Ballinger, Henry F Thomas, Dmitri I Kotov, Russell E Vance, Michael W Nachman, Sarah A Stanley

Genomic characterization of novel bat kobuviruses in Madagascar: Implications for viral evolution and zoonotic risk

Freddy L. Gonzalez, Gwenddolen Kettenburg, Hafaliana Christian Ranaivoson, Angelo Andrianiaina, Santino Andry, Vololoniaina Raharinosy, Tsiry Hasina Randriambolamanantsoa, Vincent Lacoste, Philippe Dussart, Jean-Michel Héraud, Cara E. Brook

Macrophages orchestrate elimination of Shigella from the intestinal epithelial cell niche via TLR-induced IL-12 and IFN-γ

Kevin D Eislmayr, Charlotte A Nichols, Fitty L Liu, Sudyut Yuvaraj, Janet Peace Babirye, Justin L Roncaioli, Jenna Vickery, Gregory M Barton, Cammie F Lesser, Russell E Vance

Lineage-specific defence systems of pandemic Vibrio cholerae

Melanie Blokesch and Kimberley D. Seed

Severe acute respiratory syndrome (SARS) mathematical models and disease parameters: a systematic review

Christian Morgenstern, Thomas Rawson, Isobel Routledge, Mara Kont, Natsuko Imai-Eaton, Janetta Skarp, Patrick Doohan, Kelly McCain, Rob Johnson, H Juliette T Unwin, Tristan Naidoo, Dominic P Dee, Kanchan Parchani, Bethan N Cracknell Daniels, Anna Vicco, Kieran O Drake, Paula Christen, Richard J Sheppard, Sequoia I Leuba, Joseph T Hicks, Ruth McCabe, Rebecca K Nash, Cosmo N Santoni, Gina Cuomo-Dannenburg, Sabine van Elsland, Sangeeta Bhatia, Anne Cori, Aaron Morris, Amy Dighe, Anna-Maria Hartner, Arran Hamlet, Ben Lambert, Bethan Cracknell Daniels, Charlie Whittaker, Cosmo Santoni, Cyril Geismar, Dariya Nikitin, David Jorgensen, Dominic Dee, Ed Knock, Ettie Unwin, Hayley Thompson, Ilaria Dorigatti, Jack Wardle, Joseph Hicks, Keith Fraser, Kelly Charniga, Kieran Drake, Lily Geidelberg, Lorenzo Cattarino, Mantra Kusumgar, Marc Baguelin, Pablo Perez Guzman, Paul Lietar, Rebecca Nash, Rich Fitzjohn, Richard Sheppard, Sequoia Leuba, Shazia Ruybal-Pesantez, Sreejith Radhakrishnan, Zulma Cucunuba Perez