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Publications

CEND affiliates and fellows are research leaders - publishing new discoveries to accelerate progress against neglected and emerging diseases.

Publications

IgM antibodies and B cells are early responders during acute secondary viral infections and contribute to protection from severe disease

Tulika Singh, Rohan Shinkre, Nharae Lee, Nethra Koushik, Aaron Graber, Jenny Granera, Amir Balakhmet, Elias Duarte, Sandra Bos, José Victor Zambrana, Sonia Arguello, Federico Narvaez, Angel Balmaseda, Eva Harris

The impact of heterogeneous contact structure on the evolution of pathogen virulence

Xander O’Neill, Andy White, Matthew J Silk, Graham R Northrup, Chadi M Saad-Roy, P Signe White, Mike Boots

A pre-post pilot study with and without subsidy to promote improved backyard poultry-raising practices to reduce exposure to poultry and poultry feces in rural Bangladesh

Laura H Kwong, Jesmin Sultana, Elizabeth D Thomas, Mohammad Rofi Uddin, Shifat Khan, Jennifer Ching, Mahfuza Islam, Aminul Islam, Ireen Sultana Shanta, Nadia Ali Rimi, Mahbubur Rahman, Peter J Winch, Tarique Md Nurul Huda

ORC binding to Heterochromatin Protein 1 through intrinsically disordered regions is required for heterochromatin structure and function

Yuchang Luo, Srivarsha Rajshekar, Harish Kumar, James M Berger, Gary H Karpen, Michael R Botchan

Structure and evolution-guided design of minimal RNA-guided nucleases

Petr Skopintsev, Isabel Esain-Garcia, Evan C DeTurk, Peter H Yoon, Zehan Zhou, Trevor Weiss, Maris Kamalu, Ajit Chamraj, Kenneth J Loi, Conner J Langeberg, Ron S Boger, Hunter Nisonoff, Hannah M Karp, Lin-Xing Chen, Honglue Shi, Kamakshi Vohra, Jillian F Banfield, Jamie HD Cate, Steven E Jacobsen, Jennifer A Doudna

SSRI prescription during acute COVID-19 and risk of Long COVID symptoms and conditions among patients with depression

Zachary Butzin-Dozier, Yunwen Ji, Lin-Chiun Wang, Manav Kumar, A Jerrod Anzalone, Eric Hurwitz, Ariana Budhihartanto, Rena C Patel, Alan Hubbard, Jodi Halpern

How proteins fold

Carlos Bustamante, Christian M Kaiser, Erik Lindahl, Robert Sosa, Giovanni Volpe

Black Patients Underdiagnosed With Long COVID In The US Compared With White Patients: Article examines Long COVID diagnosis for black patients and white patients

Zachary Butzin-Dozier, Yunwen Ji, Sarang Deshpande, A Jerrod Anzalone, Lin-Chiun Wang, Eric Hurwitz, Manav Kumar, Rena C Patel, Jing Sun, McKaylee Robertson, Andrew Mertens, Marlene Camacho-Rivera, John M Colford, Alan Hubbard, Charisse Madlock-Brown

Development and analytical validation of a fluorescent recombinase polymerase amplification-assay for real-time detection of Phyllosticta citricarpa, the causative agent of Citrus Black Spot

Federico La Spada, Rossana Parlascino, Mario Riolo, Sebastiano Conti Taguali, Antonella Pane, Matteo Garbelotto, Bryant Davenport, Marcos Amato, Santa Olga Cacciola

The Immunophenotype and proviral landscape of HIV-infected CD4 T cells during antiretroviral therapy

Cyrille L Delley, Sakshi Shah, Kevin M Joslin, Yujung P Park, Benjamin Demaree, Michael P Busch, Mars Stone, Steven G Deeks, Eli A Boritz, Adam R Abate, Iain C Clark

Harmonizing standards and resources for the medical genome

Euan A Ashley, Ash A Alizadeh, Hanae Armitage, Ami S Bhatt, Yair Blumenfeld, Andrew Carroll, R Martin Chavez, Petros Giannikopoulos, Megan E Grove, Meghan C Halley, Kiran Khush, Niall J Lennon, Samantha Maragh, Alexander Marson, Benedict Paten, Adam M Phillippy, Matthew H Porteus, Heidi L Rehm, Bradley R Ringeisen, Julia Salzman, Valerie A Schneider, Fritz J Sedlazeck, Lars M Steinmetz, Fyodor D Urnov, Stacia K Wyman, Justin M Zook, Lloyd B Minor, Jennifer A Doudna

Improving Fidelity of Implementation of Self-administered Pulse Oximetry and Remote Patient Monitoring in Honduras during the COVID-19 Pandemic

Kathryn  W. Roberts, Berta Alvarez, Michael de St. Aubin, Omar Diaz, Salome Garnier,  Rachel See,  Saul Cruz, Lorenzo Pavon, Anthony D. So, Ligia Paina, Tara Kirk Sell, Shiony Midence, Angela Amador Ochoa, Homer Mejia Santos, Jonathan Ochoa, Sogeiry Solis, Devan Dumas, Margaret Baldwin, C. Daniel Schnorr, Alcides Martinez, Avi J. Hakim, Eric Nilles

Evaluating the impact of antiviral post-exposure prophylaxis for health-care workers during ebolavirus outbreaks: a modelling study

Jacob N Stapley, Youngsuk Ko, Geetha Jeyapragasan, Elana MG Chan, Abel W Walekhwa, Cathal Mills, Christophe Fraser, Arthur L Reingold, Dav Ebengo, Christl A Donnelly, Placide K Mbala, Charles Whittaker

Principal Components Analysis fails to recover phylogenetic structure in hominins

Levi Y Raskin, Maja Šešelj, Bárbara D Bitarello, Sofia Stroustrup, Jacky K Li, John Huelsenbeck

Impaired IFNγ responsiveness of monocyte-derived lung cells limits immunity to Mycobacterium tuberculosis

Weihao Zheng, Jason D Limberis, Zachary P Howard, Alexander Mohapatra, Enzo Takagi, Joel D Ernst

Micro-costing for national-scale azithromycin mass drug administration to improve child survival in Niger

Brittany Peterson, William Nguyen, Laminou Maliki Haroun, Farissatou Oumarou, Ahmed M Arzika, Ramatou Maliki, Abdou Amza, Karamba Alio, Nasser Gallo, Bawa Aichatou, Ismael Issa Sara, Diallo Beidi, James G Kahn, Stefano M Bertozzi, Elodie Lebas, Benjamin F Arnold, Thomas M Lietman, Kieran S O’Brien, Meagan C Fitzpatrick, AVENIR Study Group

Estimating probabilities of malaria importation in southern Mozambique through modelling P. falciparum genomics and mobility patterns

Arnau Pujol, Arlindo Chidimatembue, Clemente da Silva, Simone Boene, Henriques Mbeve, Pau Cisteró, Carla García-Fernández, Arnau Vañó-Boira, Dário Tembisse, José Inácio, Glória Matambisso, Fabião Luis, Nelo Ndimande, Humberto Munguambe, Lidia Nhamussua, Wilson Simone, Andrés Aranda-Díaz, Manuel García-Ulloa, Neide Canana, Maria Tusell, Júlia Montaña, Laura Fuente-Soro, Khalid Ussene Bapu, Maxwell Murphy, Bernardete Rafael, Eduard Rovira-Vallbona, Caterina Guinovart, Bryan Greenhouse, Sonia Maria Enosse, Francisco Saúte, Pedro Aide, Baltazar Candrinho, Alfredo Mayor