Tulika Singh, Rohan Shinkre, Nharae Lee, Nethra Koushik, Aaron Graber, Jenny Granera, Amir Balakhmet, Elias Duarte, Sandra Bos, José Victor Zambrana, Sonia Arguello, Federico Narvaez, Angel Balmaseda, Eva Harris
Publications
CEND affiliates and fellows are research leaders - publishing new discoveries to accelerate progress against neglected and emerging diseases.

The impact of heterogeneous contact structure on the evolution of pathogen virulence
Xander O’Neill, Andy White, Matthew J Silk, Graham R Northrup, Chadi M Saad-Roy, P Signe White, Mike Boots
Improved and Simplified Treatment of Short-range Intramolecular Interactions in Polarizable Force Fields
Yingze Wang, Aalim S Abdullah, Teresa Head-Gordon
A pre-post pilot study with and without subsidy to promote improved backyard poultry-raising practices to reduce exposure to poultry and poultry feces in rural Bangladesh
Laura H Kwong, Jesmin Sultana, Elizabeth D Thomas, Mohammad Rofi Uddin, Shifat Khan, Jennifer Ching, Mahfuza Islam, Aminul Islam, Ireen Sultana Shanta, Nadia Ali Rimi, Mahbubur Rahman, Peter J Winch, Tarique Md Nurul Huda
ORC binding to Heterochromatin Protein 1 through intrinsically disordered regions is required for heterochromatin structure and function
Yuchang Luo, Srivarsha Rajshekar, Harish Kumar, James M Berger, Gary H Karpen, Michael R Botchan
Bead-free deterministic DNA barcoding using vacuum-driven loading of aqueous oligonucleotides to microwell arrays
Patrycja Baranowska, Trinh Lam, Amy E Herr
Structure and evolution-guided design of minimal RNA-guided nucleases
Petr Skopintsev, Isabel Esain-Garcia, Evan C DeTurk, Peter H Yoon, Zehan Zhou, Trevor Weiss, Maris Kamalu, Ajit Chamraj, Kenneth J Loi, Conner J Langeberg, Ron S Boger, Hunter Nisonoff, Hannah M Karp, Lin-Xing Chen, Honglue Shi, Kamakshi Vohra, Jillian F Banfield, Jamie HD Cate, Steven E Jacobsen, Jennifer A Doudna
SSRI prescription during acute COVID-19 and risk of Long COVID symptoms and conditions among patients with depression
Zachary Butzin-Dozier, Yunwen Ji, Lin-Chiun Wang, Manav Kumar, A Jerrod Anzalone, Eric Hurwitz, Ariana Budhihartanto, Rena C Patel, Alan Hubbard, Jodi Halpern
How proteins fold
Carlos Bustamante, Christian M Kaiser, Erik Lindahl, Robert Sosa, Giovanni Volpe
Black Patients Underdiagnosed With Long COVID In The US Compared With White Patients: Article examines Long COVID diagnosis for black patients and white patients
Zachary Butzin-Dozier, Yunwen Ji, Sarang Deshpande, A Jerrod Anzalone, Lin-Chiun Wang, Eric Hurwitz, Manav Kumar, Rena C Patel, Jing Sun, McKaylee Robertson, Andrew Mertens, Marlene Camacho-Rivera, John M Colford, Alan Hubbard, Charisse Madlock-Brown
Development and analytical validation of a fluorescent recombinase polymerase amplification-assay for real-time detection of Phyllosticta citricarpa, the causative agent of Citrus Black Spot
Federico La Spada, Rossana Parlascino, Mario Riolo, Sebastiano Conti Taguali, Antonella Pane, Matteo Garbelotto, Bryant Davenport, Marcos Amato, Santa Olga Cacciola
The lung tissue environment in Mycobacterium tuberculosis infection determines local monocyte differentiation
Mohapatra A, Zheng W, Qiu L, Looney MR, Ernst JD
The Immunophenotype and proviral landscape of HIV-infected CD4 T cells during antiretroviral therapy
Cyrille L Delley, Sakshi Shah, Kevin M Joslin, Yujung P Park, Benjamin Demaree, Michael P Busch, Mars Stone, Steven G Deeks, Eli A Boritz, Adam R Abate, Iain C Clark
Harmonizing standards and resources for the medical genome
Euan A Ashley, Ash A Alizadeh, Hanae Armitage, Ami S Bhatt, Yair Blumenfeld, Andrew Carroll, R Martin Chavez, Petros Giannikopoulos, Megan E Grove, Meghan C Halley, Kiran Khush, Niall J Lennon, Samantha Maragh, Alexander Marson, Benedict Paten, Adam M Phillippy, Matthew H Porteus, Heidi L Rehm, Bradley R Ringeisen, Julia Salzman, Valerie A Schneider, Fritz J Sedlazeck, Lars M Steinmetz, Fyodor D Urnov, Stacia K Wyman, Justin M Zook, Lloyd B Minor, Jennifer A Doudna
Improving Fidelity of Implementation of Self-administered Pulse Oximetry and Remote Patient Monitoring in Honduras during the COVID-19 Pandemic
Kathryn W. Roberts, Berta Alvarez, Michael de St. Aubin, Omar Diaz, Salome Garnier, Rachel See, Saul Cruz, Lorenzo Pavon, Anthony D. So, Ligia Paina, Tara Kirk Sell, Shiony Midence, Angela Amador Ochoa, Homer Mejia Santos, Jonathan Ochoa, Sogeiry Solis, Devan Dumas, Margaret Baldwin, C. Daniel Schnorr, Alcides Martinez, Avi J. Hakim, Eric Nilles
Evaluating the impact of antiviral post-exposure prophylaxis for health-care workers during ebolavirus outbreaks: a modelling study
Jacob N Stapley, Youngsuk Ko, Geetha Jeyapragasan, Elana MG Chan, Abel W Walekhwa, Cathal Mills, Christophe Fraser, Arthur L Reingold, Dav Ebengo, Christl A Donnelly, Placide K Mbala, Charles Whittaker
Principal Components Analysis fails to recover phylogenetic structure in hominins
Levi Y Raskin, Maja Šešelj, Bárbara D Bitarello, Sofia Stroustrup, Jacky K Li, John Huelsenbeck
Impaired IFNγ responsiveness of monocyte-derived lung cells limits immunity to Mycobacterium tuberculosis
Weihao Zheng, Jason D Limberis, Zachary P Howard, Alexander Mohapatra, Enzo Takagi, Joel D Ernst
Micro-costing for national-scale azithromycin mass drug administration to improve child survival in Niger
Brittany Peterson, William Nguyen, Laminou Maliki Haroun, Farissatou Oumarou, Ahmed M Arzika, Ramatou Maliki, Abdou Amza, Karamba Alio, Nasser Gallo, Bawa Aichatou, Ismael Issa Sara, Diallo Beidi, James G Kahn, Stefano M Bertozzi, Elodie Lebas, Benjamin F Arnold, Thomas M Lietman, Kieran S O’Brien, Meagan C Fitzpatrick, AVENIR Study Group
Estimating probabilities of malaria importation in southern Mozambique through modelling P. falciparum genomics and mobility patterns
Arnau Pujol, Arlindo Chidimatembue, Clemente da Silva, Simone Boene, Henriques Mbeve, Pau Cisteró, Carla García-Fernández, Arnau Vañó-Boira, Dário Tembisse, José Inácio, Glória Matambisso, Fabião Luis, Nelo Ndimande, Humberto Munguambe, Lidia Nhamussua, Wilson Simone, Andrés Aranda-Díaz, Manuel García-Ulloa, Neide Canana, Maria Tusell, Júlia Montaña, Laura Fuente-Soro, Khalid Ussene Bapu, Maxwell Murphy, Bernardete Rafael, Eduard Rovira-Vallbona, Caterina Guinovart, Bryan Greenhouse, Sonia Maria Enosse, Francisco Saúte, Pedro Aide, Baltazar Candrinho, Alfredo Mayor
